Software
BiQ Analyzer HT
BiQ Analyzer HT is an enhanced version of BiQ Analyzer that provides extensive support for high-throughput bisulfite sequencing. BiQ Analyzer HT facilitates the processing, quality control and initial analysis of single-basepair resolution DNA methylation data. It was developed for deep bisulfite sequencing of one or more loci using the Roche 454 platform, but it easily extends to other sequencing platforms. BiQ Analyzer HT features a biologist-friendly graphical user interface, a fast alignment algorithm and a variety of ways to visualize DNA methylation data. Nevertheless, users of clonal bisulfite sequencing who do not need these new features are encouraged to keep using the classical BiQ Analyzer.
BiQ Analyzer HT emerged as a result of the intensive cooperation with the Computational Biology Department at the Max-Planck Institute for Informatics. More information on getting and using BiQ Analyzer HT can be found at the program web-site.
Deep bisulfite sequencing data processing pipeline
More information on the UDBS pipeline coming soon
Other projects the EpiGenetics group has contributed to
More information on other projects coming soon
